The *.ui.h were causing number of warnings and they do not need to be included in documentation.
@@ -94,7 +94,7 @@ INPUT = wpa_supplicant \
src/wps
FILE_PATTERNS = *.c *.h *.cpp *.m *.doxygen
RECURSIVE = YES
-EXCLUDE =
+EXCLUDE = wpa_supplicant/wpa_gui
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS = */.moc/* */.ui/*
EXAMPLE_PATH =